LOST managed to snag a few Emmy nominations (though not enough in my opinion) most notably for BEST DRAMA.
For acting, Michael Emerson (who plays Benjamin Linus) got a nod for best supporting actor.
And Damon Lindelof and Carlton Cuse were the lone writers nominated for best writing in a drama series that aren't on the Mad Men writing staff. They were nominated for The Incident.
Other nominations were for sound mixing and single camera editing in a drama series.